GenomicSEM in practice

A hands-on workshop on genomicSEM, registration required.

In preparation for the workshop, you will need to: 

  1. Install R on your computer.
  2. Install genomicSEM following these instructions.
  3. Download the reference data and note the location of the downloaded data on your computer.
  4. Download GWAS summary stats for SCZ, ASD and educational attainment. Please download the summary stats for educational attainment from Lee et al. (2018). Gene discovery and polygenic prediction from a 1.1-million-person GWAS of educational attainment. Nature Genetics50(8), 1112-1121. doi: 10.1038/s41588-018-0147-3). Please note the directory where downloaded files are located.

We suggest you review the following reference paper (and pre-print version) as well as the wiki on genomicSEM and the github repository.

Sign up for the workshop here.

Please contact  Mona Bekkhus if you have questions about the workshop.

Published Sep. 17, 2019 3:38 PM - Last modified Apr. 21, 2022 9:26 AM